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Analysis of Flexibility in Biomolecules and Networks
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Meetings
Fall 2007
Title:
Pivots and flexibility in proteins
Speaker: Lilianne Dupuis
Affiliation: Departement de physique, Universite de Montreal
Date: December 4, 2007
Title:
A new look at geometrical simulations applied to protein
Speaker: Daniel Farrell
Affiliation: Center for Biological Physics, Arizona State University
Date: November 6, 2007
Fall 2006
Title:
Getting Stuff Done with FIRST and FRODA
Speaker: Stephen Wells
Affiliation: Center for Biological Physics, Arizona State University
Date: December 8, 2006
Spring 2006
Title:
"Sticky" FRODA: Protein Folding and Drug-Design Work in Progress
Speaker: Stephen Wells
Affiliation: Arizona State University
Date: April 20, 2006
Title:
The Search for Useful Hypothetical Zeolites
Speaker: Prof. Micheal Treacy
Affiliation: Arizona State University
Date: March 30, 2006
Title:
Using Molecular Simulations to Calculate Free Energy Differences in Weakly Bound Supramolecular Complexes
Speaker: Tatyana Mamnova
Affiliation: Carnegie Mellon University
Date: February 16, 2006
Title:
Simulation of a Membrane Channel Protein Motion with FIRST5 and FRODA
Speaker: Prof. Maria Kilfoil
Affiliation: McGill University
Date: January 26, 2006
Fall 2005
Title:
A Methodology for Efficiently Sampling the Conformation Space of Molecular Structures
Speaker: Ileana Streinu
1
, Audrey Lee
2
Affiliation: Smith College
1
, UMass Amherst
2
Date: November 17, 2005
Title:
Steering conformational changes with partial targeting
Speaker: Craig Jolley
Affiliation: Arizona State University
Date: October 20, 2005
Title:
Relaxation of protein structures using FIRST/FRODA
Speaker: Dan Farrell
Affiliation: Arizona State University
Date: September 22, 2005
Spring 2005
Title:
Structural Determinants of
Brugia malayi
Asparaginyl tRNA Synthetase Affinity and Specificity for Inhibitors Discovered by Structure-Based Screening
Speaker: Sai Chetan Sukuru
Affiliation: Michigan State University
Date: April 14, 2005
Title:
A Protocol to Refine NMR Structures
Speaker: Ming Lei
Affiliation: Brandeis University
Date: March 3, 2005
Title:
Geometric Simulations of Flexible Framework Structures
Speaker: Stephen Wells
Affiliation: Arizona State University
Date: February 3, 2005
Fall 2004
Title:
Mobility, Flexibility and Springiness in Macromolecules
Speaker: Scott Menor
Affiliation: Arizona State University
Date: December 2, 2004
Title:
Modeling Framework Structures
Speaker: Stephen Wells
Affiliation: Arizona State University
Date: November 22, 2004
Title:
Rigidity/Flexibility of Proteins Assessed via Combined MD/FIRST Analysis
Speaker: Prof. Maria Kurnikova and Tatiana Mamonova
Affiliation: Carnegie Mellon University
Date: November 12, 2004
Title:
Protein Unfolding: Rigidity in the Transition State
Speaker: Brandon Hespenheide
Affiliation: Arizona State University
Date: October 7, 2004
Spring 2004
Title:
Optimizing H-bond Networks in Protein-Ligand Interfaces
Speaker: Sameer Aroroa
Affiliation: Michigan State University
Date: May 12, 2004
Title:
Hydrogen Bonds and Metals: Models for Flexibility and Rigidity of Soft Angles
Speaker: Prof. Walter Whiteley
Affiliation: York University
Date: March 19, 2004
Title:
FIRST 5.0/Viral Capsid Assembly/Body-Bar Graphs
Speaker: Prof. Michael Thorpe and Brandon Hespenheide
Affiliation: Arizona State University
Date: March 5, 2004
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